Publications
International collaborative papers
Balboula A.Z., Aboelenain M., Sakatani M., Yamanaka K., Bai H., Shirozu T., Kawahara M., Hegab A.O., Zaabel S.M., Takahashi M. Effect of E-64 Supplementation during In Vitro Maturation on the Developmental Competence of Bovine OPU-Derived Oocytes. Genes, 13 (2): 324-333.
Brevik E.C., Krzic M., Muggler C., Field D., Hannam J., Uchida Y. Soil science education – a multi-national look at current perspectives. Natural Science Education, (in press). https://doi.org/10.1002/nse2.20077
Chaudhary A.K., Pandit R. and Burton M. 2022. Effect of socioeconomic and institutional factors and sustainable land management practices on soil fertility in smallholder farms in the Mahottari District, Nepal. Land Degradation & Development, 33 (2): 269-281. https://doi.org/10.1002/ldr.4143
Chaudhary A.K., Pandit R. and Burton M. 2022. Farmyard manure use and adoption of agricultural mechanization among smallholder farmers in the Mahottari district, Nepal. World Development Perspectives, 100394. https://doi.org/10.1016/j.wdp.2022.100394
Howlett D.S., Stewart J.R., Inoue J., Sato M., Lee D.K., Wang H., Yamada T., NishiwakiA., Fernandez F.G., Toma Y. Source and accumulation of soil carbon along catena toposequences over 12,000 years in three semi-natural Miscanthus sinensis grasslands in Japan. Agriculture, 12 (1): 88. https://doi.org/10.3390/agriculture12010088
Li H., Kato T., Hayashi M., Wu L. 2022: Estimation of forest aboveground biomass of two major conifers in Ibaraki Prefecture, Japan, from PALSAR-2 and Sentinel-2 Data. Remote Sensing, 14: 468. https://doi.org/10.3390/rs14030468
Schauberger B., Kato H., Kato T., Watanabe D, Ciais P. 2022: French crop yield, area and production data for ten staple crops from 1900 to 2018 at county resolution. Scientific Data, 9: 38. https://doi.org/10.1038/s41597-022-01145-4
Sheikh A.T., Mugera A., Pandit R., Burton M., Davies S. 2022. Factors determining time to gypsum adoption to remediate irrigated salt-affected agricultural lands: Evidence from Punjab, Pakistan. Soil and Tillage Research, 217: 105266. https://doi.org/10.1016/j.still.2021.105266
Shin Y. J., Midgley G.F., Archer E., Arneth A., Barnes D.K., Chan L., Hashimoto S., Hoegh-Guldberg O., Insarov G., Leadley P., Levin L.A., Ngo H.T., Pandit R., Pires A.P.F., Pörtner H.O., Rogers .A.D., Scholes R.J., Settele J., Smith P. 2022. Actions to halt biodiversity loss generally benefit the climate. Global Change Biology, (in press). https://doi.org/10.1111/gcb.16109
Weng T.Y., Nakashima T., Villanueva-Morales A., Stewart J.R., Sacks E.J., Yamada T. Assessment of drought tolerance of Miscanthus genotypes through dry-down treatment and fixed-soil-moisture-content techniques. Agriculture, 12(1): 6. https://doi.org/10.3390/agriculture12010006
Athukoorala A.S.H., Bhujel R.C., Krakstad J.O., Tsusaka T.W., Matsuishi T.F. Temporal variation of grouper diversity and distribution on the continental shelf of Sri Lanka: a revisit after four decades. Fisheries Research, 242: 106017. https://doi.org/10.1016/j.fishres.2021.106017
Chaudhary A. K., Pandit R., Burton M. 2021.Effect of socioeconomic and institutional factors and sustainable land management practices on soil fertility in smallholder farms in the Mahottari District, Nepal. Land Degradation & Development, 33(2): 269-281. https://doi.org/10.1002/ldr.4143 11
Chiba A., Uchida Y., Kublik S., Vestergaard G., Buegger F., Schloter M., Schulz S., 2021. Soil bacterial diversity is positively correlated with decomposition rates during early phases of maize litter decomposition. Microorganisms, 9(2): 357. https://doi.org/10.3390/microorganisms9020357
Kunii H., Kubo T., Asaoka N., Balboula A.Z., Hamaguchi Y., Shimasaki T., Bai H., Kawahara M., Kobayashi H., Ogawa H., Takahashi M.Loop-mediated isothermal amplification (LAMP) and machine learning application for early pregnancy detection using bovine vaginal mucosal membrane. Biochemical and Biophysical Research Communications, 569:179-186. https://doi.org/10.1016/j.bbrc.2021.07.015
Ho K.T., Homma K., Takanari J., Bai H., Kawahara M., Nguyen K.T.K., Takahashi M. A standardized extract of Asparagus officinalis stem improves HSP70-mediated redox balance and cell functions in bovine cumulus-granulosa cells. Scientific Reports, 11:18175. https://doi.org/10.1038/s41598-021-97632-6
Lee J., Elliott M.R., Yamada T., Jung G. Field assessment of six point-mutations in SDH subunit genes conferring varying resistance levels to SDHIs in spp.
https://doi.org/10.1094/PDIS-06-20-1344-RE
Munehara M., Kaewnern M., Noranarttragoon P., Matsuishi T.F. Effectiveness of adaptive real-time closures for managing migratory species in data-limited multispecies fisheries. Asian Fisheries Science, 34(4): 365-372 https://doi.org/10.33997/j.afs.2021.34.4.009
Munehara M., Kaewnern M., Noranarttragoon P., Matsuishi T. F.Simulations of fixed closure and real-time closure to manage migratory fish species for data-limited fisheries. Ocean and Coastal Management, 211: 105736. https://doi.org/10.1016/j.ocecoaman.2021.105736
Nakamura S., Igarashi T., Uchida Y., Ito M., Hirose K., Sato T., Mufalo W., Chirwa M., Nyambe I., Nakata H., Nakayama S., Ishizuka M. 2021. Evaluation of dispersion of lead-bearing mine wastes in Kabwe district, Zambia. Minerals, 11(8): 901. https://doi.org/10.3390/min11080901
Ohashi K., Hataya S., Nakata A., Matsumoto K., Kato N., Sato W., Carlos-Shanley C., Beebe E.T., Currie C.R., Fox B.G., Takasuka T.E. Mannose- and mannobiose-specific responses of the insect-associated cellulolytic bacterium Streptomyces sp. strain SirexAA-E. Applied and Environmental Microbiology, 87(14): e02719-20. https://doi.org/10.1128/AEM.02719-20
Ohigashi T., Schloter M., Schulz S., Munthali K., Uchida Y. Changes in soil prokaryotic diversity in response to land-use changes in sub-Saharan Africa. Soil Systems, 5(4): 62. https://doi.org/10.3390/soilsystems5040062
Okimune K., Hataya S., Matsumoto K., Ushirogata K., Banko P., Takeda S., Takasuka T.E. 2021. Histone chaperone-mediated co-expression assembly of tetrasomes and nucleosomes. FEBS openbio, 11:2912-2920. https://doi.org/10.1002/2211-5463.13311
Oraegbunam C.J., Obalum S.E., Watanabe T., Madegwa Y.M., Uchida Y. Differences in carbon and nitrogen retention and bacterial diversity in sandy soil in response to application methods of charred organic materials. Applied Soil Ecology, 170, 104284. https://doi.org/10.1016/j.apsoil.2021.104284
Pattarapongpan S., Arnupapboon S., Ali A., Matsuishi T. F. Yield per recruit and spawning per recruit of three stocks of brownbanded bamboo shark () in Southeast Asia. Journal of Fisheries and Environment, 45(3): 14-27.
Shin Y.J., Midgley G.F., Archer E., Arneth A., Barnes D.K., Chan L., Hashimoto S., Hoegh-Guldberg O., Insarov G., Leadley P., Levin L.A., Ngo H.T., Pandit R., Pires A.P.F., Pörtner H.O., Rogers A.D., Scholes R.J., Settele J. and Smith P. 2022. Actions to halt biodiversity loss generally benefit the climate. Global Change Biology, 28(9): 2846-2874. https://doi.org/10.1111/gcb.16109
Other publications：
Huynh T. K. U., Saito Y., Nguyen T. M. H. Natural disasters and migration choice in Vietnam－Estimatingthe impact of EL NIÑO using household data－. Journal of Agricultural Development Studies 32(3), 28- 34. 2022
Ke J., Zhao Z., Coates C.R., Hadjithomas M., Kuftin A., Louie K., Weller D., Thomashow L., Mouncey N.J., Northen T.R., Yoshikuni Y., Metab Eng. 2022. Development of platforms for functional characterization and production of phenazines using a multi-chassis approach via CRAGE. 69: 188-197. https://doi.org/10.1016/j.ymben.2021.11.012
松宮潤也, 齋藤陽子 新型コロナウイルス禍の小麦需要：パン作りブームに着目して. 75: 67-76. http://hdl.handle.net/2115/84667 <査読無し>
岡千尋, ティ・キム・ユン・フン, ティ・フオン・ドン・クウ, 齋藤陽子 気候変動に起因する労働移動の選択―メコンデルタにおける農業生産形態の違いに注目して―. フロンティア農業経済研究, 24(2)，
Saito Y., Aizaki H., Saito H. 2022. Assessing the consumer acceptability of vaccine rice. Japanese Journal of Agricultural Economics, 24: 1-13.
Sasaki Y., Yoshikuni Y., Metab Eng. 2022. Metabolic engineering for valorization of macroalgae biomass. 71: 42-61. https://doi.org/10.1016/j.ymben.2022.01.005
Akari M., Uchida Y. Survival rates of microbial communities from livestock waste to soils —a comparison between compost and digestate. Applied and Environmental Soil Science, 6645203. https://doi.org/10.1155/2021/6645203
Akizawa H., Saito S., Kohri N., Furukawa E., Hayashi Y., Bai H., Nagano M., Yanagawa Y., Tsukahara H., Takahashi M., Kagawa S., Kawahara-Miki R., Kobayashi H., Kono T., Kawahara M. 2021. Deciphering two rounds of cell lineage segregations during bovine preimplantation development. FASEB Journal, 35(10): e21904. https://doi.org/10.1096/fj.202002762RR
Chinta Y.D., Uchida Y., Araki H. 2021. Roles of soil bacteria and fungi in controlling the availability of nitrogen from cover crop residues during the microbial hot moments. Applied Soil Ecology, 168: 104135. https://doi.org/10.1016/j.apsoil.2021.104135
Fan W., Homma M., Xu R., Kunii H., Bai H., Kawahara M., Kawaguchi T., Takahashi M. The use of a two-step removal protocol and optimized culture conditions improve development and quality of zona free mouse embryos. Biochem Biophys Res Commun. 577: 116-123. https://doi.org/10.1016/j.bbrc.2021.09.
Hayashi Y., Saito S., Bai H., Takahashi M., Kawahara M. 2021. Mitochondrial maturation in the trophectoderm and inner cell mass regions of bovine blastocysts. Theriogenology, 175: 69-76. https://doi.org/10.1016/j.theriogenology.2021.08.038
Jabusch L.K., Kim P.W., Chiniquy D., Zhao Z., Wang B., Bowen B., Kang A.J., Yoshikuni Y., Deutschbauer A.M., Singh A.K., Northen T.R. 2021. Microfabrication of a chamber for high-resolution, in situ imaging of the whole root for plant-microbe interactions. International Journal of Molecular Sciences, 22(15): 7880. https://doi.org/10.3390/ijms22157880
Jin-Feng L., Uchida Y. Effect of weed residue application on rice-straw decomposition and soil fungi-to-bacteria ratios. International Journal of Recycling Organic Waste in Agriculture<, (in press). https://doi.org/10.30486/IJROWA.2021.1926389.1229
Ke J., Robinson D., Wu Z.Y., Kuftin A., Louie K., Kosina S., Northen T., Cheng J.F., Yoshikuni Y. CRAGE-CRISPR facilitates rapid activation of secondary metabolite biosynthetic gene clusters in bacteria. Cell Chemical Biology,29(4): 696-710.e4 https://doi.org/10.1016/j.chembiol.2021.08.009
Khlystov N.A., Yoshikuni Y., Deutsch S., Sattely E.S. 2021. A plant host, Nicotiana benthamiana, enables the production and study of fungal lignin-degrading enzymes. Communications Biology, 4: 1027. https://doi.org/10.1038/s42003-021-02464-9
Kwon O.S. and Jeong H. 2021. The general equilibrium impacts of reducing agricultural nutrient emissions in Korea. Journal of Rural Development, .
Lee H. W. and Kwon O.S. Estimating the substitution effects of the reusable trash bags for the standard trash bags 2021. Journal of Environmental Policy and Administration 29(3): 49-75. https://doi.org/10.15301/jepa.2021.29.3.49
Madegwa Y.M., Uchida, Y. Land use and season drive changes in soil microbial communities and related functions in agricultural soils. Environmental DNA, 3(6): 1214-1228. https://doi.org/10.1002/edn3.244
Madegwa Y.M., Uchida, Y. Liming improves the stability of soil microbial community structures against the application of digestate made from dairy wastes. https://doi.org/10.1016/j.jenvman.2021.113356
Matsuda T. A., Matsuishi T. F. 2021 Stomach contents of pygmy sperm whales (Kogia breviceps) stranded in Hokkaido, Japan. Japan Cetology (31) 5-9. https://doi.org/10.5181/cetology.0.31_5
Murata H., Kunii H., Kusama K., Sakurai T., Bai H., Kawahara M., Takahashi M. 2021. Heat stress induces oxidative stress and activates the KEAP1-NFE2L2-ARE pathway in bovine endometrial epithelial cells. Biology of Reproduction, 105(5): 1114-1125. https://doi.org/10.1093/biolre/ioab143
Nakamura S., Igarashi T., Uchida Y., Ito, M., Hirose, K., Sato, T., Mufalo, W., Chirwa, M., Nyambe, I., Nakata, H., Nakayama, S., Ishizuka, M., 2021. Evaluation of dispersion of lead-bearing mine wastes in Kabwe district, Zambia. Minerals, 11(8): 901. https://doi.org/10.3390/min11080901
Saito S., Yamamura S., Kohri N., Bai H., Takahashi M., Kawahara M. 2021. Requirement for expression of WW domain containing transcription regulator 1 in bovine
trophectoderm development. Biochemical and Biophysical Research Communications, 555: 140-146. https://doi.org/10.1016/j.bbrc.2021.03.112
Yoshinari A., Hosokawa T., Beier M.P., Oshima K., Ogino Y., Hori C., Takasuka T.E., Fukao Y., Fujiwara T., Takano J. 2021. Transport-coupled ubiquitination of the borate transporter BOR1 for its boron-dependent degradation. Plant Cell. 33(2): 420-438. https://doi.org/10.1093/plcell/koaa020
芳山拓, 坪井潤一, 松石隆 北海道の湖に生息するサケ科魚類を対象とした遊漁者における釣果と満足度との関係. 日本水産学会誌, 87(5): 461-472. https://doi.org/10.2331/suisan.21-00007
