Publications
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- 1. International collaborative papers
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- Athukoorala S.H., Bhuje R.C., Krakstad J.O., Matsuishi T.F. (2021) Regional variation in fish species in the coastal zones of Sri Lanka, Regional Studies in Marine Science, 44, 101755, doi.org/10.1016/j.rsma.2021.101755
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- Balvanera P., Jacobs S., Nagendra H., O’Farrell P., Bridgewater P., Crouzat E., Dendoncker N., Goodwin S., Gustafsson K.M., Kadykalo A.N., Krug C.B., van Matuk F.A.M., Pandit R., Sala J.E., Schröter M., Washbourne. C.L. (2020) The science-policy interface on ecosystems and people: challenges and opportunities, Ecosystems and People, 16(1), 345-353, org/10.1080/26395916.2020.1819426, i)
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- Clough, T.J., Cardenas L.M., Friedl J., Wolf B. (2020) Nitrous oxide emissions from ruminant urine: science and mitigation for intensively managed perennial pastures, Current Opinion in Environmental Sustainability, 47, 21-27, doi:10.1016/j.cosust.2020.07.001
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- Clough T.J., Rochette P., Thomas S.M., Pihlatie M., Christiansen J.R., Thorman R.E. (2020) Global Research Alliance N2O chamber methodology guidelines: Design considerations, Environ. Qual., 49, 1081-1091, doi:10.1002/jeq2.20117
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- de Klein C.A.M., Harvey M.J., Clough, T.J., Petersen S.O., Chadwick D.R., Venterea R.T. (2020) Global Research Alliance N2O chamber methodology guidelines: Introduction, with health and safety considerations, Environ. Qual., 49, 1073-1080, doi:10.1002/jeq2.20131.
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- des Roseaux M.D., Shi S., Duff A.M., Brennan F.P., Condron L., Finn J.A., Richards K.G., O’Callaghan M., Clough T.J. (2020) Impacts of pasture species and ruminant urine on N2O emissions and nitrogen transforming microbial communities in soil mesocosms, New Zeal. J. Agr. Res., doi:10.1080/00288233.2020.1848880
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- Estifanos T., Polyakov M., Pandit R., Hailu A., Burton M. (2021) What are tourists willing to pay for securing the survival of a flagship species? The case of protection of the Ethiopian wolf, Tourism Economics, 27(1), 45-69, org/10.1177/1354816619880430, i)
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- Friedl J., Cardenas L.M., Clough T.J., Dannenmann M., Hu C., Scheer C. (2020) Measuring denitrification and the N2O:(N2O + N2) emission ratio from terrestrial soils, Current Opinion in Environmental Sustainability, 47, 61-71, doi:10.1016/j.cosust.2020.08.006
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- Glasgow E.M., Kemna E.I., Bingman C.A., Ing N., Deng K., Bianchetti C.M., Takasuka T.E., Northen T.R., Fox B.G. (2020) A structural and kinetic survey of GH5_4 endoglucanases reveals determinants of broad substrate specificity and opportunities for biomass hydrolysis, J Biol Chem.,295(51), 17752-17769, doi:10.1074/jbc.RA120.015328, @
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- Guo Z., Xu M., Nagano H., Clark C.V., Sacks E.J., Yamada T. (2021) Characterization of the Ghd8 flowering time gene in a mini-core collection of Miscanthus sinensis, Genes, 12(2), 288, org/10.3390/genes12020288, i)
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- Harlyan L.I., Matsuishi T.F., Md Saleh M.F. (2021) Feasibility of a single-species quota system for management of the Malaysian multispecies purse-seine fishery, Fisheries Management and Ecology, 28(2), 126-137, doi:10.1111/fme.12470
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- Hartoko A., Pringgenies D., Anggelina A.C., Matsuishi T. (2020) Morphology and molecular biology of benthic Java sea shark ray Rhina ancylostoma Bloch and Scheider 1801 (Elasmobranchia: Rhinidae), Annual Research & Review in Biology, 35(4) 19-31, doi: 10.9734/arrb/2020/v35i430208
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- Harvey M.J., Sperlich P., Clough T.J., Kelliher F.M., McGeough K.L., Martin R.J., Moss, R. (2020) Global Research Alliance N2O chamber methodology guidelines: Recommendations for air sample collection, storage, and analysis, Environ. Qual., 49, 1110-1125, doi:10.1002/jeq2.20129
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- Jayarathne J.R.R.N., Chamindu Deepagoda T.K.K., Clough T.J., Thomas S., Elberling B., Smits K.M. (2021) Effect of aggregate size distribution on soil moisture, soil-gas diffusivity, and N2O emissions from a pasture soil, Geoderma, 383, doi:10.1016/j.geoderma.2020.114737
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- Jayarathne J.R.R.N., Chamindu Deepagoda T.K.K., Clough T.J., Nasvi M.C.M., Thomas S., Elberling B., Smits K. (2020) Gas-Diffusivity based characterization of aggregated agricultural soils, Soil Sci. Soc. Am. J., 84, 387-398, doi:10.1002/saj2.20033
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- Khuu T.P.D., Matsuishi T.F., Nguyen M.D., Nguyen T.N.H., Saito Y., Tong Y.D. (2021) Does application of quality assurance certification by shrimp farmers enhance feasibility of implementing traceability along the supply chain? Evidence from Vietnam, Journal of Applied Aquaculture Online, 1-23, doi:10.1080/10454438.2020.1856751, i)
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- Khuu T.P.D., Nguyen T.N.H., Saito Y., Matsuishi T.F. (2021) How much do farmers expect to implement for traceability? Evidence from double-bound choices experiment of Vietnamese shrimp, Asian Fisheries Science Journal, 34, 82-92, doi:10.33997/j.afs.2021.34.1.009, i)
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- Lee J., Elliott M. R., Kim M., Yamada T., Jung G. (2021) A rapid molecular detection system for SdhB and SdhC point mutations conferring differential SDHI resistance in Clarireedia Plant Disease, 105(3), 660-666, doi.org/10.1094/PDIS-04-20-0724-RE, @, i)
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- Mitros T., Session A.M., James B.T., Wu G.A., Belaffif M.B., Clark L.V., Shu S., Dong H., Barling A., Holmes J.R., Mattick J.E., Bredeson J.V., Liu S., Farrar K., Głowacka K., Jeżowski S., Barry K., Chae W.B., Juvik J.A., Gifford J., Oladeinde A., Yamada T., Grimwood J., Putnam N.H., Vega J.D., Barth S., Klaas M., Hodkinson T., Li L., Jin X., Peng J., Yu C.Y., Heo K., Yoo J.H., Ghimire B.K., Donnison I.S., Schmutz J., Hudson M.E., Sacks E.J., Moose S.P., Swaminathan K., Rokhsar D.S. (2020) Genome biology of the paleotetraploid perennial biomass crop Miscanthus, Nature Communications 11(1), 5442, org/10.1038/s41467-020-18923-6
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- Nakamura C., Saito Y., Shwe T., (2020) Childhood health and mother empowerment in rural Myanmar, Japan Agricultural Research Quarterly, 54(3), 253-262, org/10.6090/jarq.54.253, i)
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- Nguyen M.D., Khuu T.P.D., Nguyen T.N.H., Matsuishi T. (2021) Effects of application of quality assurances certification at farm level on the probability to implement traceability for agricultural products towards global markets: Evidences from cultured-shrimp in Mekong Delta, Vietnam Science & Technology Development Journal – Economics – Law and Management, 5(1), 1314-1324, doi:10.32508/stdjelm.v5i1.690
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- 岡千尋, 齋藤陽子,ティ・フオン・ドン・クウ (2020) メコンデルタにおける塩害下でのリスクマネジメント −労働移動と複合経営に着目して−, 開発学研究, 31(1), 2-8
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- Olatoye M.O., Clark L.V., Labonte N.R., Dong H., Dwiyanti M.S., Anzoua K.G., Brummer.J.E., Ghimire B.K., Głowacka K., Heo K., Jin X., Nagano H., Peng J., Yu C.Y., Yoo J.H., Zhao H., Long S.P., Yamada T., Sacks E.J., Lipka A.E. (2020) Training Population Optimization for Genomic Selection in Miscanthum, G3 Genes|Genomes|Genetics 10, 2465-2476, doi.org/10.1534/g3.120.401402, i)
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- Pastorello G., Trotta C., Canfora E., Chu H., Christianson D., Cheah Y.W., Poindexter C., Chen J., Elbashandy A., Humphrey M., Isaac P., Polidori D., Ribeca A., van Ingen C., Zhang L., Amiro B., Ammann C., Arain M.A., Jonas Ardö J., Timothy Arkebauer T., Arndt S.K., Arriga N., Aubinet M., Aurela M., Baldocchi D., Barr A., Beamesderfer E., Marchesini L.B., Bergeron O., Beringer J., Bernhofer C., Berveiller D., Billesbach D., Black T.A., Blanken P.D., Bohrer G., Boike J., Bolstad P.V., Bonal D., Bonnefond J.M., Bowling D.R., Bracho R., Brodeur J., Brümmer C., Buchmann N., Burban B., Burns S.P., Buysse P., Cale P., Cavagna M., Cellier P., Chen S., Chini I., Christensen T.R., Cleverly J., Collalti A., Consalvo C., Cook B.D., Cook D., Coursolle C., Cremonese E., Curtis P.S., D’andrea E., Da Rocha H., Dai X., Davis K.J., De Cinti B., Agnès De Grandcourt, Anne De Ligne, Raimundo C De Oliveira, Delpierre N., Desai A.R., Di Bella C.M., Di Tommasi P., Dolman H., Domingo F., Dong G., Dore S., Duce P., Dufrêne E., Dunn A., Dušek J., Eamus D., Eichelmann U., ElKhidir H.A.M., Eugster W., Ewenz C.M., Ewers B., Famulari D., Fares S., Feigenwinter I., Feitz A., Fensholt R., Filippa G., Fischer M., Frank J., Galvagno M., Gharun M., Gianelle D., Gielen B., Gioli B., Gitelson A., Goded I., Goeckede M., Goldstein A.H., Gough C.M., Goulden M.L., Graf A., Griebel A., Gruening C., Grünwald T., Hammerle A., Han S., Han X., Hansen B.U., Hanson C., Hatakka J., He Y., Hehn M., Heinesch B., Hinko-Najera N., Hörtnagl L., Hutley L., Ibrom A., Ikawa H., Jackowicz-Korczynski M., Janouš D., Jans W., Jassal R., Jiang S., Kato T., Khomik M., Klatt J., Knohl A., Knox S., Kobayashi H., Koerber G., Kolle O., Kosugi Y., Kotani A., Kowalski A., Kruijt B., Kurbatova J., Kutsch W.L., Kwon H., Launiainen S., Laurila T., Law B., Leuning R., Li Y. (2020) The FLUXNET2015 dataset and the ONEFlux processing pipeline for eddy covariance data, Scientific Data, 7, 225, org/10.1038/s41597-020-0534-3
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- Petersen S.O., Well R., Taghizadeh-Toosi A., Clough T.J. (2020) Seasonally distinct sources of N2O in acid organic soil drained for agriculture as revealed by N2O isotopomer analysis, Biogeochemistry, 147, 15-33, doi:10.1007/s10533-019-00625-x
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- Rakatama A., Pandit R., Ma C., Iftekhar S. (2020) Policy forum: Improving the acceptability of REDD+ projects among local households in Indonesia, Forest Policy and Economics, 116, org/10.1016/j.forpol.2020.102172, i)
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- Rex D., Clough T.J., Lanigan G.J., Jansen-Willems A.B., Condron L.M., Richards K.G., Müller C. (2021) Gross N transformations vary with soil moisture and time following urea deposition to a pasture soil, Geoderma, 386, doi:10.1016/j.geoderma.2020.114904
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- Rousset C., Clough T.J., Grace, P.R., Rowlings D.W., Scheer C. (2020) Soil type, bulk density and drainage effects on relative gas diffusivity and N2O emissions, Soil Research, 58, 726-736, doi:10.1071/SR20161
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- Sharma G.P., Pandit R., White B., Polyakov. M. (2020) The Income diversification strategies of smallholder coffee producers in Nepal, Development Policy Review, 38 (6), 804-825, org/10.1111/dpr.12462, i)
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- Sun Q., Yamada T., Han Y., Takano T. (2021) Influence of salt stress on C4 photosynthesis in Miscanthus sinensis Anderss, Plant Biology, 23(1):44-56, org/10.1111/plb.13192, i)
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- Thapa Magar D., Pun S., Pandit R., Rola-Rubzen F. (2021) Pathways for building resilience to COVID-19 pandemic and revitalization of agriculture sector in Nepal, Agricultural Systems, 187, 103022, org/10.1016/j.agsy.2020.103022, i)
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- Wagner-Riddle C., Baggs E.M., Clough T.J., Fuchs K., Petersen S.O. (2020) Mitigation of nitrous oxide emissions in the context of nitrogen loss reduction from agroecosystems: managing hot spots and hot moments, Current Opinion in Environmental Sustainability, 47, 46-53, doi:10.1016/j.cosust.2020.08.002
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- Webb J.R., Clough T.J., Quayle W.C. (2021) A review of indirect N2O emission factors from artificial agricultural waters, Environmental Research Letters, 16, doi:10.1088/1748-9326/abed00
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- Yuan D., Yuan H., He X., Hu H., Qin S., Clough T., Wrage-Mönnig N., Luo J., He X., Chen M., Zhou S. (2021) Identification and verification of key functional groups of biochar influencing soil N2O emission, Fert. Soils, doi:10.1007/s00374-021-01541-9
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- Yuan H., Zeng J., Yuan D., Zhang L., Qin S., Wrage-Mönnig N., Clough T., Zhou S. (2020) Co-application of a biochar and an electric potential accelerates soil nitrate removal while decreasing N2O emission, Soil Biology and Biochemistry, 149, doi:10.1016/j.soilbio.2020.107946
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- Zhang Y., Bastos A., Maignan F., Goll D., Boucher O., Li L., Cescatti A., Vuichard N., Chen X., Ammann, C., Arain M. A., Black T. A., Chojnicki B., Kato T., Mammarella, I., Montagnani, L., Roupsard, O., Sanz, M. J., Siebicke, L., Urbaniak, M., Vaccari, F. P., Wohlfahrt, G., Woodgate, W., Ciais, P. (2020) Modeling the impacts of diffuse light fraction on photosynthesis in ORCHIDEE (v5453) land surface model, Geosci, Model Dev.,13, 5401–5423, org/10.5194/gmd-13-5401-2020, i)
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Other publications
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- Carmona C.R., Clough T.J., Beare M.H., McNally S.R. (2020) Summer irrigation of pasture enhances the transfer and short-term storage of soil organic carbon in the particulate and mineral-associated organic matter fractions, Soil Research, doi:10.1071/SR20063
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- Carmona C.R., Clough T.J., McNally S.R., Beare M.H., Tregurtha C.S., Hunt J.E. (2020) Seasonal irrigation affects the partitioning of new photosynthate carbon in soil, Soil Biology and Biochemistry, 143, doi:10.1016/j.soilbio.2020.107751
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- Clough T.J. (2021) Recent advances in grazed pasture-based dairy science, New Zeal. J. Agr. Res., 64, 1-2, doi:10.1080/00288233.2021.1866968
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- Fernandez R.L., Dillon S.L., Stipanuk M.H., Fox B.G., Brunold T.C. (2020) Spectroscopic investigation of cysteamine dioxygenase, Biochemistry, 59(26), 2450-2458, doi:10.1021/acs.biochem.0c00267
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- Glasgow E., Vander Meulen K., Kuch N., Fox B.G. (2021) Multifunctional cellulases are potent, versatile tools for a renewable bioeconomy, Curr Opin Biotechnol</, 67, 141-148, doi:10.1016/j.copbio.2020.12.020
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- Katahira H., Matsuda A., Banzai A., Eguchi Y., Matsuishi T.F. (2021) Gastric ulceration caused by Anisakis simplex sensu stricto in a harbor porpoise from the Western Pacific stock, with a molecular approach, Parasitology International, 83, 102327, doi:10.1016/j.parint.2021.102327
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- Ke, J., Wang, B., Yoshikuni Y. (2020) Microbiome engineering: Synthetic biology of plant-associated microbiomes in sustainable agriculture, Trends Biotechnol, doi:10.1016/j.tibtech.2020.07.008, i)
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- Ke, J., Yoshikuni Y. (2020) Multi-chassis engineering for heterologous production of microbial natural products, Curr Opin Biotechnol, 62, 88-97, doi:10.1016/j.copbio.2019.09.005, i)
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- Kuroda M., Miki N., Matsuishi T.F. (2020) Determinants of echolocation click frequency characteristics in small toothed whales: recent advances from anatomical information, Mammal Reviews, 50(4), 413-425, doi:10.1111/mam.12212
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- Kwon O. S., Cho H. (2020) Farm heterogeneity and technical efficiency: A Bayesian stochastic frontier analysis, Korean Journal of Agricultural Economics, 61(4), 1-25
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- Kwon O. S., Lee S. (2020) Estimating producer risk preferences and production responses using a regional optimization model, Journal of The Korean Society of Rural Planning, 26(3), 25-38
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- Lee S., Park Y., Kwon O. S. (2020) Constructing a Tomato smart farm optimization model with estimated growth functions, Journal of the Korean Data & Information Science Society, 31(4), 1-17
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- Lemke R.A.S., Olson S.M., Morse K., Karlen S.D., Higbee A., Beebe E.T., Ralph J., Coon J.J., Fox B.G., Donohue T.J. (2020) A bacterial biosynthetic pathway for methylated furan fatty acids, J Biol Chem, 295(29), 9786-9801, doi:10.1074/jbc.RA120.013697
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- Maeda S., Sakurai K., Akamatsu T., Matsuda A., Yamamura O., Kobayashi M., Matsuishi T.F. (2021) Foraging activity of harbour porpoises around a bottom-gillnet in a coastal fishing ground, under the risk of bycatch, PLOS ONE, 16(2), e0246838, doi:10.1371/journal.pone.0246838
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- Matsuda A.T., Matsuishi T.F., Ishikawa H., Yamada T.K. (2020) The stranding records in Matsumae, Hokkaido during 1992-2002, Japan Cetology, 30, 7-10, doi:10.5181/cetology.0.30_7
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- Matsuda A., Yamada T.K., Tajima Y., Kunisue T., Amano M., Matsuishi T.F. (2020) Diet of mass-stranded striped dolphins (Stenella coeruleoalba) in Southern Japan (East China Sea), Mammal Study, 46(1), 1-8, doi:10.3106/ms2020-0005
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- Matsui N., Matsuda A., Matsuishi T.F. (2020) Diet of harbour porpoises (Phocoena phocoena) around Hokkaido, Japan, Aquatic Mammals, 46(2), 183-190, doi:10.1578/AM.46.2.2020.183
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- Matsui N., Sasaki M., Kobayashi M., Shindo J., Matsuishi T.F. (2021) Growth and reproduction in the Western Pacific subspecies of the harbour porpoise (Phocoena phocoena) inhabiting Hokkaido, Japan,
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- Matsushiro M., Tsunokawa M., Matsuishi T., Kooriyama T. (2020) Composition analysis of the colostrum and attempted hand-rearing of a neglected harbor porpoise (Phocoena phocoena), Japanese Journal of Zoo and Wildlife Medicine, 25(2), 81-89, doi:10.5686/jjzwm.25.81
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- Rayner S., Clough T.J., Baisden T., Moir J. (2020) Can ruminant urine-N rate and plants affect nitrate leaching and its isotopic composition?, New Zeal. J. Agr. Res., 63, 87-105, doi:10.1080/00288233.2019.1648302
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- Sakai Y., Kobayashi H., Kato T. (2020) FLiES-SIF version 1.0: three-dimensional radiative transfer model for estimating solar induced fluorescence,
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- Wang B., Zhao Z., Jabusch L.K., Chiniquy D.M., Ono K., Conway J.M., Zhang Z., Wang G., Robinson D., Cheng J.F., Dangl J.L., Northen T.R., Yoshikuni Y. (2020) CRAGE-Duet Facilitates Modular Assembly of Biological Systems for Studying Plant-Microbe Interactions, ACS Synth Biol, 9, 2610-2615, doi:10.1021/acssynbio.0c00280, i)
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- Watanabe D., Saito Y., Tsuda M., Ohsawa R. (2020) Increased awareness and decreased acceptance of genome-editing technology: The impact of the Chinese twin babies, PLOS ONE, 15(9), e0238128, org/10.1371/journal.pone.0238128, i)
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- Yokochi, M., Sekimoto, K., Inoue, T. (2020) Subsidence of rice paddy and upland crop fields in Shinotsu Peatland, Hokkaido, Japan, Proceedings of the International Association of Hydrological Sciences, 382, 231-235, doi.org/10.5194/piahs-382-231-2020, i)
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