Publications


 

1.International collaborative papers

 

Balboula A.Z., Aboelenain M., Sakatani M., Yamanaka K., Bai H., Shirozu T., Kawahara M., Hegab A.O., Zaabel S.M., Takahashi M. Effect of E-64 Supplementation during In Vitro Maturation on the Developmental Competence of Bovine OPU-Derived Oocytes. Genes, 13 (2): 324-333. @i)

 

Brevik E.C., Krzic M., Muggler C., Field D., Hannam J., Uchida Y. Soil science education – a multi-national look at current perspectives. Natural Science Education, (in press). https://doi.org/10.1002/nse2.20077 @ i)

 

Chaudhary A.K., Pandit R. and Burton M. 2022. Effect of socioeconomic and institutional factors and sustainable land management practices on soil fertility in smallholder farms in the Mahottari District, Nepal. Land Degradation & Development, 33 (2): 269-281. https://doi.org/10.1002/ldr.4143 @i)

 

Chaudhary A.K., Pandit R. and Burton M. 2022. Farmyard manure use and adoption of agricultural mechanization among smallholder farmers in the Mahottari district, Nepal. World Development Perspectives, 100394. https://doi.org/10.1016/j.wdp.2022.100394 @i)

 

Howlett D.S., Stewart J.R., Inoue J., Sato M., Lee D.K., Wang H., Yamada T., NishiwakiA., Fernandez F.G., Toma Y.   Source and accumulation of soil carbon along catena toposequences over 12,000 years in three semi-natural Miscanthus sinensis grasslands in Japan. Agriculture, 12 (1): 88. https://doi.org/10.3390/agriculture12010088 @i)

 

Li H., Kato T., Hayashi M., Wu L. 2022: Estimation of forest aboveground biomass of two major conifers in Ibaraki Prefecture, Japan, from PALSAR-2 and Sentinel-2 Data. Remote Sensing, 14: 468. https://doi.org/10.3390/rs14030468 @i)

Schauberger B., Kato H., Kato T., Watanabe D, Ciais P. 2022: French crop yield, area and production data for ten staple crops from 1900 to 2018 at county resolution. Scientific Data, 9: 38. https://doi.org/10.1038/s41597-022-01145-4 @i)

 

Sheikh A.T., Mugera A., Pandit R., Burton M., Davies S. 2022. Factors determining time to gypsum adoption to remediate irrigated salt-affected agricultural lands: Evidence from Punjab, Pakistan. Soil and Tillage Research, 217: 105266. https://doi.org/10.1016/j.still.2021.105266 @i)

 

Shin Y. J., Midgley G.F., Archer E., Arneth A., Barnes D.K., Chan L., Hashimoto S., Hoegh-Guldberg O., Insarov G., Leadley P., Levin L.A., Ngo H.T., Pandit R., Pires A.P.F., Pörtner H.O., Rogers .A.D., Scholes R.J., Settele J., Smith P. 2022. Actions to halt biodiversity loss generally benefit the climate. Global Change Biology, (in press). https://doi.org/10.1111/gcb.16109 @i)

 

Weng T.Y., Nakashima T., Villanueva-Morales A., Stewart J.R., Sacks E.J., Yamada T. Assessment of drought tolerance of Miscanthus genotypes through dry-down treatment and fixed-soil-moisture-content techniques. Agriculture, 12(1): 6. https://doi.org/10.3390/agriculture12010006 @i)

 

Athukoorala A.S.H., Bhujel R.C., Krakstad J.O., Tsusaka T.W., Matsuishi T.F. Temporal variation of grouper diversity and distribution on the continental shelf of Sri Lanka: a revisit after four decades. Fisheries Research, 242: 106017. https://doi.org/10.1016/j.fishres.2021.106017 @i)

 

Chaudhary A. K., Pandit R., Burton M. 2021.Effect of socioeconomic and institutional factors and sustainable land management practices on soil fertility in smallholder farms in the Mahottari District, Nepal. Land Degradation & Development, 33(2): 269-281. https://doi.org/10.1002/ldr.4143 11 @i)

 

Chiba A., Uchida Y., Kublik S., Vestergaard G., Buegger F., Schloter M., Schulz S., 2021. Soil bacterial diversity is positively correlated with decomposition rates during early phases of maize litter decomposition. Microorganisms, 9(2): 357. https://doi.org/10.3390/microorganisms9020357 @i)

 

Kunii H., Kubo T., Asaoka N., Balboula A.Z., Hamaguchi Y., Shimasaki T., Bai H., Kawahara M., Kobayashi H., Ogawa H., Takahashi M.Loop-mediated isothermal amplification (LAMP) and machine learning application for early pregnancy detection using bovine vaginal mucosal membrane. Biochemical and Biophysical Research Communications, 569:179-186. https://doi.org/10.1016/j.bbrc.2021.07.015 @i)

 

Ho K.T., Homma K., Takanari J., Bai H., Kawahara M., Nguyen K.T.K., Takahashi M. A standardized extract of Asparagus officinalis stem improves HSP70-mediated redox balance and cell functions in bovine cumulus-granulosa cells. Scientific Reports, 11:18175. https://doi.org/10.1038/s41598-021-97632-6 i)

 

Lee J., Elliott M.R., Yamada T., Jung G. Field assessment of six point-mutations in SDH subunit genes conferring varying resistance levels to SDHIs in spp.

https://doi.org/10.1094/PDIS-06-20-1344-RE @i)

 

Munehara M., Kaewnern M., Noranarttragoon P., Matsuishi T.F. Effectiveness of adaptive real-time closures for managing migratory species in data-limited multispecies fisheries. Asian Fisheries Science, 34(4): 365-372 https://doi.org/10.33997/j.afs.2021.34.4.009 @i)

 

Munehara M., Kaewnern M., Noranarttragoon P., Matsuishi T. F.Simulations of fixed closure and real-time closure to manage migratory fish species for data-limited fisheries. Ocean and Coastal Management, 211: 105736. https://doi.org/10.1016/j.ocecoaman.2021.105736 @i)

 

Nakamura S., Igarashi T., Uchida Y., Ito M., Hirose K., Sato T., Mufalo W., Chirwa M., Nyambe I., Nakata H., Nakayama S., Ishizuka M. 2021. Evaluation of dispersion of lead-bearing mine wastes in Kabwe district, Zambia. Minerals, 11(8): 901. https://doi.org/10.3390/min11080901 @i)

 

Ohashi K., Hataya S., Nakata A., Matsumoto K., Kato N., Sato W., Carlos-Shanley C., Beebe E.T., Currie C.R., Fox B.G., Takasuka T.E. Mannose- and mannobiose-specific responses of the insect-associated cellulolytic bacterium Streptomyces sp. strain SirexAA-E. Applied and Environmental Microbiology, 87(14): e02719-20. https://doi.org/10.1128/AEM.02719-20 @i)

 

Ohigashi T., Schloter M., Schulz S., Munthali K., Uchida Y. Changes in soil prokaryotic diversity in response to land-use changes in sub-Saharan Africa. Soil Systems, 5(4): 62. https://doi.org/10.3390/soilsystems5040062 @i)

 

Okimune K., Hataya S., Matsumoto K., Ushirogata K., Banko P., Takeda S., Takasuka T.E. 2021. Histone chaperone-mediated co-expression assembly of tetrasomes and nucleosomes. FEBS openbio, 11:2912-2920. https://doi.org/10.1002/2211-5463.13311 @i)

 

Oraegbunam C.J., Obalum S.E., Watanabe T., Madegwa Y.M., Uchida Y. Differences in carbon and nitrogen retention and bacterial diversity in sandy soil in response to application methods of charred organic materials. Applied Soil Ecology, 170, 104284. https://doi.org/10.1016/j.apsoil.2021.104284 @i)

 

Pattarapongpan S., Arnupapboon S., Ali A., Matsuishi T. F. Yield per recruit and spawning per recruit of three stocks of brownbanded bamboo shark () in Southeast Asia. Journal of Fisheries and Environment, 45(3): 14-27. @i)

 

Shin Y.J., Midgley G.F., Archer E., Arneth A., Barnes D.K., Chan L., Hashimoto S., Hoegh-Guldberg O., Insarov G., Leadley P., Levin L.A., Ngo H.T., Pandit R., Pires A.P.F., Pörtner H.O., Rogers A.D., Scholes R.J., Settele J. and Smith P. 2022. Actions to halt biodiversity loss generally benefit the climate. Global Change Biology, 28(9): 2846-2874. https://doi.org/10.1111/gcb.16109 @i)

 

2.Other publications

 

Huynh T. K. U., Saito Y., Nguyen T. M. H. Natural disasters and migration choice in Vietnam-Estimatingthe impact of EL NIÑO using household data-. Journal of Agricultural Development Studies 32(3), 28- 34. 2022

 

Ke J., Zhao Z., Coates C.R., Hadjithomas M., Kuftin A., Louie K., Weller D., Thomashow L., Mouncey N.J., Northen T.R., Yoshikuni Y., Metab Eng. 2022. Development of platforms for functional characterization and production of phenazines using a multi-chassis approach via CRAGE. 69: 188-197. https://doi.org/10.1016/j.ymben.2021.11.012 @(i)

 

松宮潤也, 齋藤陽子 新型コロナウイルス禍の小麦需要:パン作りブームに着目して. 75: 67-76. http://hdl.handle.net/2115/84667 <査読無し>

 

岡千尋, ティ・キム・ユン・フン, ティ・フオン・ドン・クウ, 齋藤陽子 気候変動に起因する労働移動の選択―メコンデルタにおける農業生産形態の違いに注目して―. フロンティア農業経済研究, 24(2),(印刷中).

 

 

Saito Y., Aizaki H., Saito H. 2022. Assessing the consumer acceptability of vaccine rice. Japanese Journal of Agricultural Economics, 24: 1-13.

 

Sasaki Y., Yoshikuni Y., Metab Eng. 2022. Metabolic engineering for valorization of macroalgae biomass. 71: 42-61. https://doi.org/10.1016/j.ymben.2022.01.005

 

Akari M., Uchida Y. Survival rates of microbial communities from livestock waste to soils —a comparison between compost and digestate. Applied and Environmental Soil Science, 6645203. https://doi.org/10.1155/2021/6645203 @i)

 

Akizawa H., Saito S., Kohri N., Furukawa E., Hayashi Y., Bai H., Nagano M., Yanagawa Y., Tsukahara H., Takahashi M., Kagawa S., Kawahara-Miki R., Kobayashi H., Kono T., Kawahara M. 2021. Deciphering two rounds of cell lineage segregations during bovine preimplantation development. FASEB Journal, 35(10): e21904. https://doi.org/10.1096/fj.202002762RR @ii)

 

Chinta Y.D., Uchida Y., Araki H. 2021. Roles of soil bacteria and fungi in controlling the availability of nitrogen from cover crop residues during the microbial hot moments. Applied Soil Ecology, 168: 104135. https://doi.org/10.1016/j.apsoil.2021.104135 @i)

 

Fan W., Homma M., Xu R., Kunii H., Bai H., Kawahara M., Kawaguchi T., Takahashi M. The use of a two-step removal protocol and optimized culture conditions improve development and quality of zona free mouse embryos. Biochem Biophys Res Commun. 577: 116-123. https://doi.org/10.1016/j.bbrc.2021.09. @ i)

 

Hayashi Y., Saito S., Bai H., Takahashi M., Kawahara M. 2021. Mitochondrial maturation in the trophectoderm and inner cell mass regions of bovine blastocysts. Theriogenology, 175: 69-76. https://doi.org/10.1016/j.theriogenology.2021.08.038 @ ii)

 

Jabusch L.K., Kim P.W., Chiniquy D., Zhao Z., Wang B., Bowen B., Kang A.J., Yoshikuni Y., Deutschbauer A.M., Singh A.K., Northen T.R. 2021. Microfabrication of a chamber for high-resolution, in situ imaging of the whole root for plant-microbe interactions. International Journal of Molecular Sciences, 22(15): 7880. https://doi.org/10.3390/ijms22157880

 

Jin-Feng L., Uchida Y. Effect of weed residue application on rice-straw decomposition and soil fungi-to-bacteria ratios. International Journal of Recycling Organic Waste in Agriculture<, (in press). https://doi.org/10.30486/IJROWA.2021.1926389.1229 @i)

 

Ke J., Robinson D., Wu Z.Y., Kuftin A., Louie K., Kosina S., Northen T., Cheng J.F., Yoshikuni Y. CRAGE-CRISPR facilitates rapid activation of secondary metabolite biosynthetic gene clusters in bacteria. Cell Chemical Biology,29(4): 696-710.e4 https://doi.org/10.1016/j.chembiol.2021.08.009

 

Khlystov N.A., Yoshikuni Y., Deutsch S., Sattely E.S. 2021. A plant host, Nicotiana benthamiana, enables the production and study of fungal lignin-degrading enzymes. Communications Biology, 4: 1027. https://doi.org/10.1038/s42003-021-02464-9

 

Kwon O.S. and Jeong H. 2021. The general equilibrium impacts of reducing agricultural nutrient emissions in Korea. Journal of Rural Development, .

 

Lee H. W. and Kwon O.S. Estimating the substitution effects of the reusable trash bags for the standard trash bags 2021. Journal of Environmental Policy and Administration 29(3): 49-75. https://doi.org/10.15301/jepa.2021.29.3.49

 

Madegwa Y.M., Uchida, Y. Land use and season drive changes in soil microbial communities and related functions in agricultural soils. Environmental DNA, 3(6): 1214-1228. https://doi.org/10.1002/edn3.244 @i)

 

Madegwa Y.M., Uchida, Y. Liming improves the stability of soil microbial community structures against the application of digestate made from dairy wastes. https://doi.org/10.1016/j.jenvman.2021.113356 @i)

 

Matsuda T. A., Matsuishi T. F. 2021 Stomach contents of pygmy sperm whales (Kogia breviceps) stranded in Hokkaido, Japan. Japan Cetology (31) 5-9. https://doi.org/10.5181/cetology.0.31_5 @i)

 

Murata H., Kunii H., Kusama K., Sakurai T., Bai H., Kawahara M., Takahashi M. 2021. Heat stress induces oxidative stress and activates the KEAP1-NFE2L2-ARE pathway in bovine endometrial epithelial cells. Biology of Reproduction, 105(5): 1114-1125. https://doi.org/10.1093/biolre/ioab143 @ ii)

 

Nakamura S., Igarashi T., Uchida Y., Ito, M., Hirose, K., Sato, T., Mufalo, W., Chirwa, M., Nyambe, I., Nakata, H., Nakayama, S., Ishizuka, M., 2021. Evaluation of dispersion of lead-bearing mine wastes in Kabwe district, Zambia. Minerals, 11(8): 901. https://doi.org/10.3390/min11080901

 

Saito S., Yamamura S., Kohri N., Bai H., Takahashi M., Kawahara M. 2021. Requirement for expression of WW domain containing transcription regulator 1 in bovine
trophectoderm development. Biochemical and Biophysical Research Communications, 555: 140-146. https://doi.org/10.1016/j.bbrc.2021.03.112 @ ii)

 

Yoshinari A., Hosokawa T., Beier M.P., Oshima K., Ogino Y., Hori C., Takasuka T.E., Fukao Y., Fujiwara T., Takano J. 2021. Transport-coupled ubiquitination of the borate transporter BOR1 for its boron-dependent degradation. Plant Cell. 33(2): 420-438. https://doi.org/10.1093/plcell/koaa020

 

芳山拓, 坪井潤一, 松石隆 北海道の湖に生息するサケ科魚類を対象とした遊漁者における釣果と満足度との関係. 日本水産学会誌, 87(5): 461-472. https://doi.org/10.2331/suisan.21-00007

 

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